Read CEL files into an ExpressionSet and generate a matrix
meta:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
samplesheet:file
CSV or TSV format sample sheet with sample metadata and CEL file names
celfiles_dir:list
Path to a directory containing CEL files
*.{CEL,CEL.gz}
meta2:map
description:file
Optional description file in MIAME format
rds
*.rds:file
Serialised ExpressionSet object
*.rds
expression
*matrix.tsv:file
TSV-format intensity matrix
matrix.tsv
annotation
*.annotation.tsv:file
TSV-format annotation table
*.annotation.tsv
versions
versions.yml:file
File containing software versions
versions.yml
Methods for Affymetrix Oligonucleotide Arrays
